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The BN/PBN Toolbox is
written in MATLAB and can be used to work with Boolean Networks and
Probabilistic Boolean Networks. It includes functions for simulating the
network dynamics, computing network statistics (numbers and sizes of
attractors, basins, transient lengths, Derrida curves, percolation on
2-D lattices, influence matrices), computing state transition matrices
and obtaining stationary distributions, inferring networks from data,
generating random networks and functions, visualization and printing,
intervention, and membership testing of Boolean functions.
This toolbox is written and maintained by
Harri Lähdesmäki and
Ilya
Shmulevich. |
