Books

W. Zhang and I. Shmulevich, Eds. Computational And Statistical Approaches To Genomics, Kluwer Academic Publishers, Boston, 2002.

W. Zhang, I. Shmulevich, J. Astola. Microarray Quality Control, John Wiley and Sons, March 2004.

E. R. Dougherty, I. Shmulevich, J. Chen, Z. J. Wang, Eds. Genomic Signal Processing and Statistics, Hindawi Publishing Corporation, 2005.

W. Zhang and I. Shmulevich, Eds. Computational And Statistical Approaches To Genomics, 2nd Edition, Springer, 2006.

I. Shmulevich and E. R. Dougherty. Genomic Signal Processing, Princeton University Press, 2007.

Journals

Computational Biology  (by year)

2008

M. Nykter, H. Lähdesmäki, A. Rust, V. Thorsson, I. Shmulevich, "A data integration framework for prediction of transcription factor targets: a BCL6 case study" (submitted).

J. Boyle, C. Cavnor, S. Killcoyne, I. Shmulevich, "Systems biology driven software design for the research enterprise," BMC Bioinformatics, Vol. 9, No. 295, 2008.

W. Liu, H. Lähdesmäki, E. R. Dougherty, I. Shmulevich, "Inference of Boolean Networks using Sensitivity Regularization," EURASIP Journal on Bioinformatics and Systems Biology, Vol. 2008, Article ID 780541, 12 pages, 2008.

E. Balleza, E. Alvarez-Buylla, A. Chaos, S. A. Kauffman, I. Shmulevich, M. Aldana, "Critical Dynamics in Genetic Regulatory Networks: Examples from Four Kingdoms," PLoS ONE, Vol. 3, No. 6, e2456, 2008.

H. Lähdesmäki, I. Shmulevich, “Learning the Structure of Dynamic Bayesian Networks from Time Series and Steady State Measurements," Machine Learning, Vol. 71, pp. 185-217, 2008.

D. J. Galas, M. Nykter, G. W. Carter, N. D. Price, I. Shmulevich, "Set-based complexity and biological information," (submitted).

M. Korb, A. G. Rust, V. Thorsson, C. Battail, B. Li, D. Hwang, K. Kennedy, J. C. Roach, C. M. Rosenberger, M. Gilchrist, D. Zak, C. Johnson, B. Marzolf, A. Aderem, I. Shmulevich, H. Bolouri, "The Innate Immune Database (IIDB)," BMC Immunology, Vol. 9, No. 7, 2008.

H. Lähdesmäki, A. G. Rust, I. Shmulevich, "Probabilistic inference of transcription factor binding from multiple data sources," PLoS ONE, Vol. 3, No. 3, e1820, 2008.

S. A. Ramsey, S. L. Klemm, D. E. Zak, K. A. Kennedy, V. Thorsson, B. Li, M. Gilchrist, E. Gold, C. D. Johnson, V. Litvak, G. Navarro, J. C. Roach, C. M. Rosenberger, A. G. Rust, N. Yudkovsky, A. Aderem, I. Shmulevich, "Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics," PLoS Computational Biology, Vol. 4, No. 3, e1000021, 2008.

M. Nykter, N. D. Price, A. Larjo, T. Aho, S. A. Kauffman, O. Yli-Harja, I. Shmulevich, "Critical networks exhibit maximal information diversity in structure-dynamics relationships," Physical Review Letters, Vol. 100, 058702, 2008.

M. Nykter, N. D. Price, M. Aldana, S. A. Ramsey, S. A. Kauffman, L. Hood, O. Yli-Harja, I. Shmulevich, "Gene Expression Dynamics in the Macrophage Exhibit Criticality," Proceedings of the National Academy of Sciences of the USA, Vol. 105, No. 6, pp. 1897-1900, 2008.

2007

S. A. Kauffman, R. K. Logan, R. Este, R. Goebel, D. Hobill, I. Shmulevich, "Propagating Organization: An Enquiry," Biology and Philosophy, Vol. 23, No. 1, pp. 27-45, 2007.

R. Vêncio, I. Shmulevich, "ProbCD: enrichment analysis accounting for categorization uncertainty," BMC Bioinformatics, Vol. 8, No. 383, 2007.

P. Krawitz, I. Shmulevich, "Entropy of complex relevant components in Boolean networks," Physical Review E, Vol. 76, 036115, 2007.

N. D. Price, I. Shmulevich, "Biochemical and statistical network models for systems biology," Current Opinion in Biotechnology, Vol. 18, pp. 365-370, 2007.

R. Vêncio, L. Varuzza, C. Pereira, H. Brentani, I. Shmulevich, "Simcluster: clustering enumeration gene expression data on the simplex space," BMC Bioinformatics, Vol. 8, No. 246, 2007.

M. Ahdesmäki , H. Lähdesmäki, A.  Gracey , I. Shmulevich and O. Yli-Harja, "Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data," BMC Bioinformatics, Vol. 8, No. 233, 2007.

P. Krawitz, I. Shmulevich, "Basin Entropy in Boolean Network Ensembles," Physical Review Letters, Vol. 98, No. 15, pp. 158701, 2007.

N. D. Price, J. Trent, A. K. El-Naggar, D. Cogdell, E. Taylor, K. K. Hunt, R. E. Pollock, L. Hood, I. Shmulevich, W. Zhang, “Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas,” Proceedings of the National Academy of Sciences of the USA, Vol. 104, No. 9, pp- 3414-3419, 2007.

2006

H. Lähdesmäki, S. Hautaniemi, I. Shmulevich, O. Yli-Harja, "Relationships Between Probabilistic Boolean Networks and Dynamic Bayesian Networks as Models of Gene Regulatory Networks" Signal Processing, Vol. 86, No. 4, pp. 814-834, 2006.

M. Nykter, K. K. Hunt, R. E. Pollock, A. K. El-Naggar, E. Taylor, I. Shmulevich, O. Yli-Harja, W. Zhang, “Unsupervised analysis uncovers changes in histopathologic diagnosis in supervised genomic studies,” Technology in Cancer Research and Treatment, Vol. 5, No. 2, pp. 177-182, 2006.

R. Jiang, C. Mircean, I. Shmulevich, D. Cogdell, Y. Jia, I. Tabus, K. Aldape, R. Sawaya, J. M. Bruner, G. N. Fuller, W. Zhang, “Pathway alterations during glioma progression revealed by reverse phase protein lysate arrays,” Proteomics, Vol. 6, pp. 2964-2971, 2006. [cover picture]

I. Tabus, A. Hategan, C. Mircean, J. Rissanen, I. Shmulevich, W. Zhang, J. Astola, “Nonlinear modeling of protein expressions in protein arrays,” IEEE Transactions on Signal Processing, Vol. 54, No. 6, pp. 2394-2407, 2006.

2005

A. Niemistö, V. Dunmire, O. Yli-Harja, W. Zhang, I. Shmulevich, "Analysis of angiogenesis using in vitro experiments and stochastic growth models," Physical Review E, Vol. 72, 062902, 2005.

T. Toulouse, P. Ao, I. Shmulevich, S. A. Kauffman, “Noise in a Small Genetic Circuit that Undergoes Bifurcation,” Complexity, Vol. 11, No. 1, pp. 45-51, 2005.

I. Shmulevich, S. A. Kauffman, M. Aldana, "Eukaryotic cells are dynamically ordered or critical but not chaotic" Proceedings of the National Academy of Sciences of the USA, Vol. 102, No. 38, pp. 13439-13444, 2005.

M. Brun, E. R. Dougherty, I. Shmulevich, “Steady-State Probabilities for Attractors in Probabilistic Boolean Networks,” Signal Processing, Vol. 85, No. 4, pp. 1993-2013, 2005.

I. Shmulevich, "The prospect of systems biology for toxicology," Igaku no Ayumi (Journal of Clinical and Experimental Medicine), Vol. 213, No. 4, pp. 269-272, 2005 (in Japanese).

E. Lee, C. Mircean, I. Shmulevich, H. Wang, J. Liu, A. Niemistö, J. Kavanagh, JH Lee, W. Zhang, "Insulin-like growth factor binding protein 2 promotes ovarian cancer cell invasion" Molecular Cancer, Feb 02;4(1):7, 2005.

A. Niemistö, V. Dunmire, O. Yli-Harja, W. Zhang, I. Shmulevich, "Robust quantification of in vitro angiogenesis through image analysis," IEEE Transactions on Medical Imaging, Vol. 24, No. 4, pp. 549-553, 2005.

 C. Mircean, I. Shmulevich, D. Cogdell, W. Choi, Y. Jia, I. Tabus, S. R. Hamilton, W. Zhang, "Robust estimation of protein expression ratios with lysate microarray technology," Bioinformatics, Vol. 21, No. 9, pp. 1935-1942, 2005.

H. Lähdesmäki, I. Shmulevich, V. Dunmire, O. Yli-Harja, W. Zhang, "In Silico Microdissection of Microarray Data from Heterogeneous Cell Populations," BMC Bioinformatics 6:54, 2005.

G. N. Fuller, C. Mircean, I. Tabus, E. Taylor, R. Sawaya, J. M. Bruner, I. Shmulevich, W. Zhang, "Molecular voting for glioma classification reflecting heterogeneity in the continuum of cancer progression," Oncology Reports, Vol. 14, pp. 651-656, 2005.

2004

I. Shmulevich, S. A. Kauffman, "Activities and Sensitivities in Boolean Network Models," Physical Review Letters, Vol. 93, No. 4, pp. 048701(1-4), 2004. [Supplementary material available here]

I. Shmulevich, "Book review: Guide to analysis of DNA microarray data, second edition," Bulletin of Mathematical Biology, Vol. 66, pp. 1939-1942, 2004.

R. F. Hashimoto, S. Kim, I. Shmulevich, W. Zhang, M. L. Bittner, E. R. Dougherty, "Growing genetic regulatory networks from seed genes," Bioinformatics, Vol. 20, No. 8, pp. 1241-1247, 2004.

E. R. Dougherty, I. Shmulevich, M. L. Bittner, "Genomic Signal Processing: The Salient Issues," EURASIP Journal on Applied Signal Processing, Vol. 2004, No. 1, pp. 146-153, 2004.

H. Lähdesmäki, X. Hao, B. Sun, L. Hu, O. Yli-Harja, I. Shmulevich, and W. Zhang, "Distinguishing key biological pathways between primary breast cancers and their lymph node metastases by gene function-based clustering analysis," International Journal of Oncology, Vol. 24, No. 6, pp. 1589–1596, June 2004.

X. Hao, B. Sun, L. Hu, H. Lähdesmäki, V. Dunmire, Y. Feng, S.-W. Zhang, H. Wang, C. Wu, H. Wang, G. N. Fuller, W. F. Symmans, I. Shmulevich, and W. Zhang, "Differential gene and protein expression in primary breast malignancies and their lymph node metastases as revealed by combined cDNA microarray and tissue microarray analysis," Cancer, Vol. 100, No. 6, pp. 1110-1122, 2004.

C. Mircean, I. Tabus, T. Kobayashi, M. Yamaguchi, H. Shiku, I. Shmulevich, W. Zhang, "Pathway Analysis of Informative Genes from Microarray Data Reveals that Metabolism and Signal Transduction Genes Distinguish Different Subtypes of Lymphomas," International Journal of Oncology, Vol. 24, No. 3, pp. 497-504, 2004.

2003

I. Shmulevich, H. Lähdesmäki, E. R. Dougherty, J. Astola, W. Zhang, "The role of certain Post classes in Boolean network models of genetic networks," Proceedings of the National Academy of Sciences of the USA, Vol. 100, No. 19, pp. 10734-10739, 2003.

I. Shmulevich, I. Gluhovsky, R. Hashimoto, E. R. Dougherty, and W. Zhang, "Steady-State Analysis of Genetic Regulatory Networks Modeled by Probabilistic Boolean Networks," Comparative and Functional Genomics, Vol. 4, No. 6, pp. 601-608, 2003. [Supplementary material available here]

I. Shmulevich, "Model Selection in Genomics," Guest Editorial in Toxicogenomics Section of Environmental Health Perspectives, Vol. 111, No. 6, May 2003, pp. A328-A329.

I. Shmulevich, J. Astola, D. Cogdell, S. R. Hamilton, and W. Zhang, "Data Extraction From Composite Oligonucleotide Microarrays," Nucleic Acids Research, Vol. 31, No. 7, e36, 2003.

E. R. Dougherty and I. Shmulevich, "Mappings Between Probabilistic Boolean Networks," Signal Processing, Vol. 83, No. 4, pp. 799-809, 2003.

H. Lähdesmäki, I. Shmulevich, and O. Yli-Harja, "On Learning Gene Regulatory Networks Under the Boolean Network Model," Machine Learning, Vol. 52, pp. 147-167, 2003.

J. Morikawa, H. Li, S. Kim, K. Nishi, S. Ueno, E. Suh, E. Dougherty, I. Shmulevich, H. Shiku, W. Zhang, and T. Kobayashi, "Identification of signature genes by microarray for acute myeloid leukemia without maturation and acute promyelocytic leukemia with t(15;17)(q22;q12)(PML/RARa)," International Journal of Oncology, Vol. 23, No. 3, pp. 617-625, 2003.

T. Kobayashi, M. Yamaguchi, S. Kim, J. Morikawa, S. Ogawa, S. Ueno, E. Suh, E. Dougherty, I. Shmulevich, H. Shiku, W. Zhang, "Microarray Reveals Differences in Both Tumors and Vascular Specific Gene Expression in De Novo CD5+ and CD5- Diffuse Large B-cell Lymphomas," Cancer Research, vol. 63, pp. 60-66, January 2003.

2002

I. Shmulevich, E.R. Dougherty, and W. Zhang, "From Boolean to probabilistic Boolean networks as models of genetic regulatory networks,'' Proceedings of the IEEE, Vol. 90, No. 11, pp. 1778-1792, 2002.

I. Shmulevich, E. R. Dougherty, W. Zhang, "Gene Perturbation and Intervention in Probabilistic Boolean Networks," Bioinformatics, Vol. 18, No. 10, pp. 1319-1331, 2002.

I. Shmulevich, E.R. Dougherty, and W. Zhang, "Control of stationary behavior in Probabilistic Boolean Networks by means of structural intervention," Journal of Biological Systems, Vol. 10, No. 4, pp. 431-445, 2002.

I. Shmulevich, W. Zhang, "Binary Analysis and Optimization-Based Normalization of Gene Expression Data," Bioinformatics, Vol. 18, No. 4, pp. 555-565, 2002.

I. Shmulevich, E. R. Dougherty, S. Kim, W. Zhang, "Probabilistic Boolean Networks: A Rule-based Uncertainty Model for Gene Regulatory Networks," Bioinformatics, Vol. 18, No. 2, pp. 261-274, 2002.

S. Kim, E. R. Dougherty, I. Shmulevich, K. R. Hess, S. R. Hamilton, J. M. Trent, G. N. Fuller, W. Zhang, "Identification of Combination Gene Sets for Glioma Classification," Molecular Cancer Therapeutics, vol. 1, pp. 1229-1236, November 2002.

I. Shmulevich, K. Hunt, A. El-Naggar, E. Taylor, L. Ramdas, P. Labordé, K. R. Hess, R. Pollock, W. Zhang, "Tumor Specific Gene Expression Profiles in Human Leiomyosarcoma: an Evaluation of Intra-Tumor Heterogeneity," Cancer, Vol. 94, No. 7, pp. 2069-2075, 2002.

Signal Processing and Statistics

A. Niemistö, I. Shmulevich, V. Lukin, A. Dolia, and O. Yli-Harja, "Correction of Misclassifications Using a Proximity-Based Estimation Method," EURASIP Journal on Applied Signal Processing, Vol. 2004, No. 8, pp. 1142-1155, 2004.

I. Shmulevich, H. Lähdesmäki, and K. Egiazarian, "Spectral Methods for Testing Membership in Certain Post Classes and the Class of Forcing Functions" IEEE Signal Processing Letters, Vol. 11, No. 2, pp. 289-292, 2004.

I. Gluhovsky, V. Melnik, I. Shmulevich, "Markov Random Field Modeling in Median Pyramidal Transform Domain for Denoising Applications," Journal of Mathematical Imaging and Vision, Vol. 16, pp. 237-249, 2002.

V. Katkovnik, I. Shmulevich, "Kernel Density Estimation with Varying Data-Driven Bandwidth," Pattern Recognition Letters, Vol. 23, pp. 1641-1648, 2002.

I. Shmulevich, A. van der Ven, "An Inhibition-Based Stochastic Countable-Time Decision Model," British Journal of Mathematical and Statistical Psychology, Vol. 55, pp. 17-25, 2002.

I. Shmulevich, O. Yli-Harja, J. Astola, A. Korshunov, "On the Robustness of the Class of Stack Filters," IEEE Transactions on Signal Processing, Vol. 50, No. 7, pp. 1640-1649, July 2002.

V. Melnik, I. Shmulevich, K. Egiazarian, and J. Astola, "Block-Median Pyramidal Transform: Analysis and Denoising Applications," IEEE Transactions on Signal Processing, Vol. 49, No. 2, pp. 364-372, February 2001.

I. Shmulevich, G. R. Arce, "Spectral Design of Weighted Median Filters Admitting Negative Weights," IEEE Signal Processing Letters, Vol. 8, No. 12, pp. 313-316, December 2001.

I. Shmulevich, J. L. Paredes, G. R. Arce, "Output Distributions of Stack Filters Based on Mirrored Threshold Decomposition," IEEE Transactions on Signal Processing, Vol. 49, No. 7, pp. 1454-1460, July 2001. (published correction due to errors in production is here...)

O. Yli-Harja, P. Koivisto, J. A. Bangham, G. Cawley, R. Harvey and I. Shmulevich, "Simplified Implementation of the Recursive Median Sieve," Signal Processing, Vol. 81, No. 7, pp. 1565-1570, July 2001.

I. Shmulevich, V. Melnik, K. Egiazarian, "The Use of Sample Selection Probabilities for Stack Filter Design" IEEE Signal Processing Letters, vol. 7, no. 7, pp. 189-192, July 2000.

I. Shmulevich, K. Egiazarian, O. Yli-Harja, and J. Astola, "Output Distributions of Stack Filters Using Ordered Binary Decision Diagrams," Journal of Signal Processing, vol. 4, no. 2, pp. 195-200, March 2000 (Special Issue on Nonlinear Signal Processing).

P. Koivisto, O. Yli-Harja, A. Niemistö, and I. Shmulevich, "Breakdown Probabilities of Recursive Stack Filters," Signal Processing, Vol. 81, No. 1, pp. 227-231, December 2000.

I. Shmulevich, O. Yli-Harja, K. Egiazarian, J. Astola, "Output Distributions of Recursive Stack Filters," IEEE Signal Processing Letters, vol. 6, no. 7, pp. 175-178, July 1999.

Discrete Mathematics and Computational Learning Theory

I. Shmulevich, "Average Sensitivity of Typical Monotone Boolean Functions," arXiv math.CO/0507030 (2005).

W. Just, I. Shmulevich, J. Konvalina, "The number and probability of canalizing functions," Physica D, Vol. 197, pp. 211-221, 2004.

A. D. Korshunov, I. Shmulevich, "On the Distribution of the Number of Monotone Boolean Functions Relative to the Number of Lower Units," Discrete Mathematics, Vol. 257, pp. 463-479, 2002.

I. Shmulevich, M. Gabbouj, J. Astola, "Complexity of the Consistency Problem for Certain Post Classes," IEEE Transactions on Systems, Man, and Cybernetics, Part B, Vol. 31, No. 2, pp. 251-253, April 2001.

I. Shmulevich, A. D. Korshunov, J. Astola, "Almost all monotone Boolean functions are polynomially learnable using membership queries," Information Processing Letters, Vol. 79, No. 5, pp. 211-213, September 2001.

A. D. Korshunov, I. Shmulevich, "The Number of Special Monotone Boolean Functions and Statistical Characteristics of Stack Filters," Discrete Analysis and Operations Research, vol. 7, no. 3, pp. 17-44, June 2000. (in Russian) [English abstract from AMS]

Music

I. Shmulevich, "A note on the pitch contour similarity index," Journal of New Music Research, Vol. 33, No. 1, pp. 17-18, 2004.

I. Shmulevich, O. Yli-Harja, E. J. Coyle, D. Povel, K. Lemström, "Perceptual Issues in Music Pattern Recognition – Complexity of Rhythm and Key Finding," Computers and the Humanities, Vol. 35, No. 1, pp. 23-35, February 2001.

I. Shmulevich, O. Yli-Harja, "Localized Key-Finding: Algorithms and Applications," Music Perception, Vol. 17, No. 4, pp. 531-544, Summer 2000.

I. Shmulevich, D.J. Povel, "Measures of Temporal Pattern Complexity," Journal of New Music Research, Vol. 29, No. 1, pp. 61-69, March 2000.

Book Chapters

K. S. Ramos, J. Quakenbush, I. Shmulevich, J. Stuart, M. Waters, “Bioinformatic Approaches and Computational Models for Data Integration and Cross-Species Extrapolation in the Post-Genomic Era,” Genomic Approaches for Cross-Species Extrapolation in Toxicology, W. H. Benson, R. Di Giulio, Eds., Society of Environmental Toxicology and Chemistry (SETAC), 2006.

E. R. Dougherty, I. Shmulevich, J. Chen, J. Wang, "Genomic signal processing: perspectives," Genomic Signal Processing and Statistics, E. R. Dougherty, I. Shmulevich, J. Chen, Z. J. Wang, Eds., EURASIP, 2005.

C. D. Giurcaneanu, I. Tabus, I. Shmulevich, W. Zhang, "Clustering genes and samples from glioma microarray data," Interdisciplinary Applications of Fractal and Chaos Theory, R. Dobrescu and C. Vasilescu, Eds., The Publishing House of the Romanian Academy, Bucharest, Romania, pp. 157-171, 2004.

I. Tabus, C. Mircean, W. Zhang, I. Shmulevich, and J. Astola, "Transcriptome-based glioma classification using informative gene set," Genomic and Molecular Neuro-Oncology, W. Zhang and G. Fuller, Eds., Jones and Bartlett Pub., 2003.

I. Shmulevich, E. R. Dougherty, "Genetic Regulatory Networks: A Nonlinear Signal Processing Perspective," Nonlinear Signal and Image Processing: Theory, Methods, and Applications, K. Barner and G. Arce, Eds., CRC Press, pp. 507-523, 2003.

I. Shmulevich, A. Saarinen, O. Yli-Harja, J. Astola, "Inference of genetic regulatory networks under the Best-Fit Extension paradigm," in Computational And Statistical Approaches To Genomics, W. Zhang and I. Shmulevich, Eds., Kluwer Academic Publishers, Boston, 2002.

G. Fuller, K. Hess, C. Mircean, I. Tabus, I. Shmulevich, C. H. Rhee, K. D. Aldape, J. Bruner, R. A. Sawaya, W. Zhang, "Human glioma diagnosis from gene expression data," in Computational And Statistical Approaches To Genomics, W. Zhang and I. Shmulevich, Eds., Kluwer Academic Publishers, Boston, 2002.

Q. Wei, E. M. Sturgis, M. R. Spitz, H. W. Mohrenweiser, I. Shmulevich, S. Kong, D. Cogdell, Q. Mi, W. Zhang, "Single Nucleotide Polymorphisms, DNA repair, and Cancer," in Computational And Statistical Approaches To Genomics, W. Zhang and I. Shmulevich, Eds., Kluwer Academic Publishers, Boston, 2002.

I. Shmulevich, D. J. Povel, "Complexity Measures of Musical Rhythms," Rhythm Perception and Production, Desain & Windsor, Eds., Lisse: Swets & Zeitlinger (2000), pp. 239-244.

Refereed Conference Papers

R. Pal, H. Lähdesmäki, I. Shmulevich, O. Yli-Harja, E. R. Dougherty, "On the constraint of gene regulatory networks to canalizing functions and Post classes," Sixth IEEE International Workshop on Genomic Signal Processing and Statistics, Phoenix, Arizona, June 8-10, 2008.

A. Larjo, H. Lähdesmäki, M. Facciotti, N. Baliga, O. Yli-Harja, I. Shmulevich, "Active learning of Bayesian network structure in a realistic setting," Fifth International Workshop on Computational Systems Biology WCSB 2008, Leipzig, Germany, June 11-13, 2008.

J. Selinummi, A. Niemistö, R. Saleem, G. W. Carter, J. Aitchison, O. Yli-Harja, I. Shmulevich, and J. Boyle, "A Case Study on 3-D Reconstruction and Shape Description of Peroxisomes in Yeast, " IEEE International Conference on Signal Processing and Communication (ICSPC07), Dubai, United Arab Emirates (UAE), November 24-27, 2007.

A. Niemistö, T. Korpelainen, R. Saleem, O. Yli-Harja, J. Aitchison, I. Shmulevich, "A K-Means Segmentation Method for Finding 2-D Object Areas Based on 3-D Image Stacks Obtained by Confocal Microscopy," 29th International Conference of the IEEE Engineering in Medicine and Biology Society, Lyon, France, August 23-26, 2007.

H. Lähdesmäki, I. Shmulevich, "Probabilistic framework for transcription factor binding prediction," IEEE International Workshop on Genomic Signal Processing and Statistics, Tuusula, Finland, June 10-12, 2007.

A. Niemistö, J. Selinummi, R. Saleem, I. Shmulevich, J. Aitchison, O. Yli-Harja, "Extraction of the number of peroxisomes in yeast cells by automated image analysis," The 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, New York, New York, August 30 - September 3, 2006.

C. Gershenson, S. A. Kauffman, and I. Shmulevich, "The Role of Redundancy in the Robustness of Random Boolean Networks," in Rocha, L. M., L. S. Yaeger, M. A. Bedau, D. Floreano, R. L. Goldstone, and A. Vespignani (Eds.), Artificial Life X, Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems, pp. 35-42. MIT Press, 2006.

A. Niemistö, I. Shmulevich, O. Yli-Harja, L. Chirieac, S. R. Hamilton, “Automated Quantification of Lymph Node Size and Number in Surgical Specimens of Stage II Colorectal Cancer,” 27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Shanghai, China, September 1-4, 2005, pp. 6313 - 6316.

M. Nykter, O. Yli-Harja, I. Shmulevich, "Normalized compression distance for gene expression analysis" Workshop on Genomic Signal Processing and Statistics (GENSIPS), Newport, RI, May 22-25, 2005.

I. Tabus, A. Hategan, C. Mircean, I. Shmulevich, W. Zhang, J. Astola, "Nonlinear modeling of protein expression ratios in lysate array technology" Workshop on Genomic Signal Processing and Statistics (GENSIPS), Newport, RI, May 22-25, 2005.

H. Lähdesmäki, O. Yli-Harja, W. Zhang, I. Shmulevich, "Intrinsic dimensionality in gene expression analysis" Workshop on Genomic Signal Processing and Statistics (GENSIPS), Newport, RI, May 22-25, 2005.

A. Niemistö, L. Hu, O. Yli-Harja, W. Zhang, I. Shmulevich, "Quantification of in vitro cell invasion through image analysis," in Proceedings of the 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS'04), San Francisco, California, USA, Sep. 1-5, 2004, pp. 1703-1706.

C. Mircean, I. Tabus, J. Astola, T. Kobayashi, H. Shiku, M. Yamaguchi, I. Shmulevich, W. Zhang, "Quantization and similarity measure selection for discrimination of lymphoma subtypes under k-nearest neighbor classification," Proceedings of SPIE Photonics West, Biomedical Optics, San Jose, CA, Jan. 24-29, 2004.

A. Niemistö, V. Lukin, I. Shmulevich, O. Yli-Harja, "Correction of misclassification in recognition of local image features with different classifiers," Proceedings of the Finnish Signal Processing Symposium, Tampere, Finland, May 2003.

C. D. Giurcaneanu, I. Tabus, I. Shmulevich, W. Zhang, "Stability-based cluster analysis applied to microarray data," Seventh International Symposium on Signal Processing and its Applications, Paris, France, July 1-4, 2003, pp. 57-60.

C. D. Giurcaneanu, I. Tabus, I. Shmulevich, W. Zhang, "Clustering genes and samples from glioma microarray data," The First South-East European Symposium on Interdisciplinary approaches in fractal analysis, Bucharest, Romania, May 7-10, 2003.

A. Niemistö, V. Lukin, A. Dolia, O. Yli-Harja, I. Shmulevich, "Misclassification Correction in Primary Local Recognition of Component Images of Multichannel Remote Sensing Data," SPIE Image and Signal Processing for Remote Sensing, Toulouse, France, September 17-21, 2001, pp. 134-145.

I. Shmulevich, O. Yli-Harja, J. Astola, "Inference of Genetic Regulatory Networks Under the Best-Fit Extension Paradigm," IEEE - EURASIP Workshop on Nonlinear Signal and Image Processing (NSIP-01), Baltimore, Maryland, June 3-6, 2001.

I. Shmulevich, G. R. Arce, "Generalized Mallows' Optimization for Weighted Median Filters Admitting Negative Weights," IEEE - EURASIP Workshop on Nonlinear Signal and Image Processing (NSIP-01), Baltimore, Maryland, June 3-6, 2001.

V. Katkovnik, K. Egiazarian, I. Shmulevich, "Adaptive Varying Window Size Filtering Based on Intersection of Confidence Intervals Rule," IEEE - EURASIP Workshop on Nonlinear Signal and Image Processing (NSIP-01), Baltimore, Maryland, June 3-6, 2001.

V. Melnik, I. Shmulevich, K. Egiazarian, J. Astola, "Image Denoising Based on Locally-Adaptive Filtering in The Median Pyramidal Transform Domain," IEEE - EURASIP Workshop on Nonlinear Signal and Image Processing (NSIP-01), Baltimore, Maryland, June 3-6, 2001.

A. Niemistö, V. Lukin, I. Shmulevich, O. Yli-Harja, A. Dolia, "A Training-Based Optimization Framework for Misclassification Correction," 12th Scandinavian Conference on Image Analysis (SCIA 2001), Bergen, Norway, June 11-14, 2001, pp. 691-698.

H. Lähdesmäki, I. Shmulevich, L. Pezzati, "Optimization of Edge Detectors for Topographic Maps of Cave Inscriptions," 12th Scandinavian Conference on Image Analysis (SCIA 2001), Bergen, Norway, June 11-14, 2001.

I. Gluhovsky, V. Melnik, I. Shmulevich, "Markov Random Field Modeling in Median Pyramidal Transform Domain for Denoising Applications," SPIE 13-th Annual Symposium on Electronic Imaging, Nonlinear Image Processing and Pattern Analysis XII, San Jose, CA, January 21-26, 2001.

V. Katkovnik, I. Shmulevich, "Nonparametric Density Estimation with Adaptive Varying Window Size," Conference on Image and Signal Processing for Remote Sensing VI, European Symposium on Remote Sensing, Barcelona, Spain, September 25-29, 2000.

V. V. Lukin, I. Shmulevich, O. Yli-Harja, A. N. Dolia, "Correction of Misclassifications for Primary Local Image Recognition Using a Nonlinear Graph-Based Estimation Technique," Conference on Image and Signal Processing for Remote Sensing VI, European Symposium on Remote Sensing, Barcelona, Spain, September 25-29, 2000.

I. Shmulevich, B. Cramariuc, M. Gabbouj, "A framework for ordinal-based image correspondence," X European Signal Processing Conference (EUSIPCO-2000), 5-8 September 2000, Tampere, Finland, pp. 1389-1392.

I. Shmulevich, M. Gabbouj, "Reliable Learning Using Post Classes," X European Signal Processing Conference (EUSIPCO-2000), 5-8 September 2000, Tampere, Finland, pp. 2437-2440.

A. Niemistö, O. Yli-Harja, A. Valmari, P. Koivisto, and I. Shmulevich, "Reduction factors in finite automata with application to nonlinear filters,'' X European Signal Processing Conference (EUSIPCO-2000), 5-8 September 2000, Tampere, Finland, pp. 2441-2444.

I. Shmulevich, K. Egiazarian, V. Melnik, and V. Katkovnik, "Optimal Stack Filters with Adaptive Window Size Using the Intersection of Confidence Intervals Rule," IEEE Signal Processing Symposium, March 23-24, 2000, Hilvarenbeek, The Netherlands.

I. Shmulevich and O. Yli-Harja, "On the Statistical Behavior of Almost All Stack Filters," IEEE Signal Processing Symposium, March 23-24, 2000, Hilvarenbeek, The Netherlands.

B. Cramariuc, I. Shmulevich, M. Gabbouj, A. Makela, "A new image similarity measure based on ordinal correlation," IEEE International Conference on Image Processing, Vancouver, BC, Canada, September 10 - 13, 2000.

I. Shmulevich, J. L. Paredes, and G. R. Arce, "Statistics of Stack Filters with Mirrorred Threshold Decomposition," IEEE International Conference on Acoustics, Speech, and Signal Processing, Istanbul, Turkey, June 5-9, 2000.

V. Melnik, K. Egiazarian, I. Shmulevich, P. Kuosmanen, "A Tree Of Median Pyramidal Decomposions With An Application To Signal Denoising," IEEE International Conference on Acoustics, Speech, and Signal Processing, Istanbul, Turkey, June 5-9, 2000.

V. Melnik, I. Shmulevich, K. Egiazarian, J. Astola, "Image Denoising Using a Block-Median Pyramid," IEEE International Conference on Image Processing, Kobe, Japan, October 25-28, 1999, pp. 162-166.

I. Shmulevich, K. Egiazarian, O. Yli-Harja, J. Astola, "Efficient computation of output distributions of stack filters using Ordered Binary Decision Diagrams," Conference on Computer Science and Information Technologies, Yerevan, Armenia, August 17-23, 1999, pp. 252-255.

I. Shmulevich, O. Yli-Harja, K. Egiazarian, J. Astola, "Root signals of stack filters and regular languages," Conference on Computer Science and Information Technologies, Yerevan, Armenia, August 17-23, 1999, pp. 227-230.

O. Yli-Harja, I. Shmulevich, K. Egiazarian, J. Astola, "On the Structure of State Transition Matrices of Recursive and Nonrecursive Stack Filters," Conference on Computer Science and Information Technologies, Yerevan, Armenia, August 17-23, 1999, pp. 261-264.

J. Astola, I. Shmulevich, O. Yli-Harja, K. Egiazarian, "Statistical properties of nonlinear filters based on monotone Boolean functions," Conference on Computer Science and Information Technologies, Yerevan, Armenia, August 17-23, 1999, pp. 97-106.

I. Shmulevich, V. Melnik, K. Egiazarian, "Optimization of Stack Filters Using Sample Selection Probabilities," Proceedings of IEEE-EURASIP Workshop on Nonlinear Signal and Image Processing, Antalya, Turkey, June 20-23, 1999, pp. 496-500.

I. Shmulevich, V. Melnik, K. Egiazarian, "Combination of transform based denoising and stack filtering for non-Gaussian noise suppression," Proceedings of IEEE-EURASIP Workshop on Nonlinear Signal and Image Processing, Antalya, Turkey, June 20-23, 1999, pp. 282-286.

O. Yli-Harja, I. Shmulevich, K. Lemström, "Graph-based Smoothing of Class Data with Applications in Musical Key Finding," Proceedings of IEEE-EURASIP Workshop on Nonlinear Signal and Image Processing, Antalya, Turkey, June 20-23, 1999, pp. 311-315.

O. Yli-Harja, I. Shmulevich, J. A. Bangham, R. Harvey, S. Dasmahapatra, S. Cox, "Run-length Distributions of Recursive Median Filters Using Probabilistic Automata," Proceedings of Scandinavian Conference on Image Analysis, Kangerlussuaq, Greenland, June 7-11, 1999, pp. 251-258.

P. Koivisto, O. Yli-Harja, A. Niemistö, I. Shmulevich, "A Method for Calculating Breakdown Probabilities of Recursive Stack Filters Based on Markov Chain Models," International Symposium on Nonlinear Theory and its Applications, Hawaii, USA, November 28-December 2, 1999, pp. 73-76.

O. Yli-Harja, I. Shmulevich, "Correcting Misclassifications in Hyperspectral Image Data Using a Nonlinear Graph-based Estimation Technique," International Symposium on Nonlinear Theory and its Applications, Hawaii, USA, November 28-December 2, 1999, pp. 259-262.

V. Melnik, I. Shmulevich, K. Egiazarian, "Block-Pyramidal Transform: Analysis and Applications," Second International Workshop on Transforms and Filter Banks, Brandenburg, Germany, June, 1999.

I. Shmulevich, O. Yli-Harja, E. J. Coyle, D. Povel, K. Lemström, "Perceptual Issues in Music Pattern Recognition – Complexity of Rhythm and Key Finding," Proceedings of Symposium on Artificial Intelligence and Musical Creativity, Convention of the Society for the Study of Artificial Intelligence and Simulation of Behaviour, Edinburgh, 1999, pp. 64-69.

V. Melnik, I. Shmulevich, K. Egiazarian, J. Astola, "Iterative Block-Median Pyramid Transform-Based Denoising," Proceedings of SPIE Wavelet Applications in Signal and Image Processing VII, Denver, CO, July 18-23, 1999, pp. 502-511.

O. Yli-Harja, I. Shmulevich, "Asymptotic analysis of expected run-lengths of recursive median filters," Proceedings of Finnish Signal Processing Symposium, Oulu, Finland, May 1999, pp. 122-126.

O. Yli-Harja, I. Shmulevich, "Efficient representation and implementation of recursive median filters and their cascade compositions," Proceedings of Finnish Signal Processing Symposium, Oulu, Finland, May 1999, pp. 84-88.

I. Shmulevich, "Generation of Idempotent Monotone Boolean Functions," Proceedings of the IX European Signal Processing Conference, Island of Rhodes, Greece, 1998, pp. 1405-1407.

I. Shmulevich, E.J. Coyle, "Compact Monotone Boolean Functions," Proceedings of the IASTED International Conference on Signal Processing and Communications, Gran Canaria, Canary Islands, Spain, 1998, pp. 235-237.

I. Shmulevich, E.J. Coyle, "On the Structure of Idempotent Monotone Boolean Functions," Proceedings of NOBLESSE Workshop on Non-Linear Model Based Image Analysis, Glasgow, Scotland, 1998, Springer-Verlag, pp. 339-344.

I. Shmulevich, D. Povel, "Rhythm Complexity Measures for Music Pattern Recognition," Proceedings of IEEE Workshop on Multimedia Signal Processing, Redondo Beach, California, December 7-9, 1998, pp. 167-172.

E.J. Coyle, I. Shmulevich, "A System for Machine Recognition of Music Patterns," Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, Seattle, WA, 1998, pp. 3597-3600.

I. Shmulevich, E.J. Coyle, "Establishing the Tonal Context for Musical Pattern Recognition," Proceedings of the 1997 IEEE Workshop on Applications of Signal Processing to Audio and Acoustics, New Paltz, N.Y., 1997.

I. Shmulevich, E.J. Coyle, "The Use of Recursive Median Filters for Establishing the Tonal Context in Music," Proceedings of the 1997 IEEE Workshop on Nonlinear Signal and Image Processing, Mackinac Island, MI, 1997.

I. Shmulevich, E.J. Coyle, "Generation of Reversely Symmetric Monotone Boolean Functions," Proceedings of the IASTED International Conference on Signal and Image Processing, New Orleans, LA, 1997, pp. 399-402.

I. Shmulevich, T.M. Sellke, M. Gabbouj, E.J. Coyle, "Stack Filters and Free Distributive Lattices," Proceedings of the 1995 IEEE Workshop on Nonlinear Signal and Image Processing, Halkidiki, Greece, 1995, pp. 927-930.

Conference Presentations and Abstracts

I. Shmulevich, "Modeling and Inference of Transcriptional Regulatory Networks," The 2nd DREAM Conference, New York, NY, December 3-4, 2007 (invited).

I. Shmulevich, "Modeling and Inference of Transcriptional Regulatory Networks," Fifth IEEE International Workshop on Genomic Signal Processing and Statistics, Tuusula, Finland, June 10-12, 2007 (invited).

H. Lähdesmäki, A. Larjo, O. Yli-Harja, I. Shmulevich, "Inferring dynamic signaling networks from steady-state measurements," 11th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2007), San Francisco, CA, April 21-25, 2007.

I. Shmulevich, "Modeling and Inference of Genetic Networks: Computational and Experimental Approaches," International Workshop on Systems Biology, National University of Ireland, Maynooth, Ireland, July 17-19, 2006 (invited).

I. Shmulevich, "Insights from Boolean modeling of genetic regulatory networks," Workshop on New Directions in Genetic Regulatory Networks, Cuernavaca, Morelos, México, September 24th - October 1st, 2006 (invited).

I. Shmulevich, "Insights from Boolean modeling of genetic regulatory networks," Twenty-First Annual IEEE Symposium on Logic in Computer Science (LICS 2006), Seattle, WA, August 12th-15th, 2006 (invited).

N. D. Price, I. Shmulevich, B. Lin, W. Zhang, N. Urban, C. Drescher, L. Hood, "Molecular Signatures That Differentiate Cancer Subtype and Predict Clinical Outcome," The American Institute of Chemical Engineers Annual Meeting, San Francisco, CA, November 12-17, 2006.

I. Shmulevich, "Computational and Experimental Approaches to the Study of Genetic Networks," 20th IUBMB International Congress of Biochemistry and Molecular Biology, Kyoto, Japan, June 18-23, 2006 (invited).

I. Shmulevich, "Probabilistic Boolean Networks" Biological Reactive Intermediates Conference VII: BRIs and Human Health and Disease, Tucson, Arizona, January 4th - 7th, 2006.

I. Shmulevich, "Are Eukaryotic Cells Dynamically Ordered, Critical, or Chaotic?" Systems and Biology Keystone Symposium, Keystone, CO, Apr. 8-13, 2005.

L. Chirieac, Y. Suehiro, A. Niemistö, I. Shmulevich, S. Lunagomez, J. Morris, and S. R. Hamilton, “Size and number of negative lymph nodes impact outcome in patients with node-negative stage II colorectal cancer,” in 2005 Annual Meeting of the United States and Canadian Academy of Pathology, San Antonio, Texas, USA, February 26 - March 4, 2005.

R. Jiang, C. Mircean, I. Shmulevich, D. Cogdell, Y. Jia, K. Aldape, R. Sawaya, G. N. Fuller, W. Zhang, “Alterations of PI3K/Akt, RSK/Bad, and cell cycle pathways during glioma progression as revealed by protein profiles” Oncogenomics 2005, San Diego, CA, Feb. 2-6, 2005.

C. Mircean, I. Shmulevich, D. Cogdell, W. Choi, Y. Jia, I. Tabus, S. R. Hamilton, W. Zhang, “Robust estimation of protein expression ratios with lysate microarray technology” Oncogenomics 2005, San Diego, CA, Feb. 2-6, 2005.

I. Shmulevich, "Computational and Experimental Approaches to the Study of Genetic Networks," Toxicogenomics International Forum 2004, Kyoto, Japan, October 12-13, 2004 (invited).

H. Lähdesmäki, I. Shmulevich, V. Dunmire, O. Yli-Harja, and W. Zhang, "In Silico Microdissection of Microarray Data from Heterogeneous Cell Populations," 12th International Conference on Intelligent Systems for Molecular Biology (ISMB) / 3rd European Conference on Computational Biology (ECCB), Glasgow, UK, July 31 - August 4, 2004.

L. Chirieac, Y. Suehiro, A. Niemistö, I. Shmulevich, S. Lunagomez, J. Morris, and S. R. Hamilton, “Size and number of examined lymph nodes impacts outcome in patients with stage II colorectal cancer,” American Society of Clinical Oncology 2004 Annual Meeting, New Orleans, Louisiana, USA, June 5-8, 2004.

I. Shmulevich, “Post Classes in Boolean Network Models,” Workshop on Discrete Models for Genetic Regulatory Networks, College Station, TX, Nov. 5-6, 2003. (invited)

I. Shmulevich and W. Zhang, “Probabilistic Boolean Networks As Models of Genetic Regulatory Networks,” Pathways, Networks, and Systems: Theory and Experiments, Santorini, Greece, September 28 - October 2, 2003.

H. Lähdesmäki, O. Yli-Harja, I. Shmulevich, and W. Zhang, “Distinguishing key biological pathways by knowledge-based multidimensional scaling analysis: application to discriminate between primary breast cancers and their lymph node metastases,” Bioinformatics 2003, Helsinki, Finland, May 22-24, 2003.

I. Shmulevich, "Probabilistic Boolean Networks as Models of Gene Regulatory Networks: Inference, Simulation, Intervention," American Statistical Association Summer Research Conference in Statistics, Jekyll Island, Georgia, USA, June 8-11, 2003 (invited).

T.  Kobayashi, M. Yamaguchi, S. Kim, J. Morikawa, S. Ogawa, S. Ueno, E. Suh, E. Dougherty, I. Shmulevich, H. Shiku, and W. Zhang, "Gene Expression Profiling and Immunohistochemistry Reveals Differences in Both Lymphoma cells and Vascular Specific Gene Expression in De Novo CD5+ and CD5- Diffuse Large B-cell Lymphomas," Oncogenomics 2003, Phoenix, Arizona, January 29-February 2, 2003.

T. Kobayashi, M. Yamaguchi, S. Kim, J. Morikawa, S. Ogawa, S. Ueno, E. Suh, E. Dougherty, I. Shmulevich, H. Shiku, and W. Zhang, "Gene Expression Profiling and Immunohistochemistry Reveals Differences in Both Lymphoma cells and Vascular Specific Gene Expression in De Novo CD5+ and CD5- Diffuse Large B-cell Lymphomas," 44th Annual Meeting of the American Society of Hematology, Philadelphia, PA, Dec. 6-10, 2002.

H. Lähdesmäki, X. Hao, B. Sun, L. Hu, O. Yli-Harja, G. N. Fuller, I. Shmulevich, and W. Zhang, "Distinguishing primary breast cancers and their lymph node metastases by knowledge-based multidimensional scaling analysis," Oncogenomics 2003, Phoenix, Arizona, USA, January 29-February 2, 2003.

S. Kim, E. R. Dougherty, I. Shmulevich, K. R. Hess, S. R. Hamilton, J. M. Trent, G. N. Fuller, W. Zhang, "Multivariate analysis finds strong features for glioma sub-classifications," Oncogenomics 2003, Phoenix, Arizona, USA, January 29-February 2, 2003.

I. Shmulevich, A. Datta, A. Choudhary, W. Zhang, M. Bittner, and E. Dougherty, "Intervention and control in genetic regulatory networks," Oncogenomics 2003, Phoenix, Arizona, USA, January 29-February 2, 2003.

I. Shmulevich, "Modeling genetic regulatory networks with probabilistic Boolean networks," Society of Toxicology 42nd Annual Meeting, Salt Lake City, UT, March 9-13, 2003 (invited).

I. Shmulevich, "Genetic Regulatory Networks: Inference, Simulation, Intervention," The Second Sino-US Symposium on Medicine in the 21st Century, Shanghai, China, October 25-30, 2002. (invited)

I. Shmulevich, "Genetic Networks and Identification of Intervention Targets," International Conference on Translational Cancer Research and Therapy, Tianjin, China, October 21-23, 2002. (invited)

I. Shmulevich, E. R. Dougherty, S. Kim, W. Zhang, "Modeling Genetic Regulatory Networks with Probabilistic Boolean Networks: From Inference to Intervention," 2002 SIAM 50th Anniversary and Annual Meeting, Philadelphia, PA, USA, July 8-12, 2002. (invited)

I. Shmulevich, E. R. Dougherty, S. Kim, W. Zhang, "Probabilistic Boolean Networks as Models of Gene Regulatory Networks: From Inference to Intervention," The 10th International Conference on Intelligent Systems for Molecular Biology (ISMB 2002), Edmonton, Canada, August 3-7, 2002.

I. Shmulevich, "Probabilistic Boolean Networks as Models of Genetic Regulatory Networks," presented at Houston Forum On Cancer Genomics And Informatics, Houston, TX, July 27, 2001. (invited)

I. Shmulevich, "The use of harmonic analysis on the cube for studying activities of variables of Boolean functions," presented at Spectral Transforms and Logic Design for Future Digital Systems (SPECLOG 2000), Tampere, Finland, June 2, 2000. (invited)

A. D. Korshunov, I. Shmulevich, "Special monotone Boolean functions and statistical characteristics of stack filters," IV International Conference on Discrete Models in the Theory of Control Systems, Moscow State University, June 19-25, 2000, pp. 44-46. (in Russian)

A. D. Korshunov, I. Shmulevich, "The number of special monotone Boolean functions and stack filters," International Conference on Discrete Analysis and Operations Research, Novosibirsk, Russia, June 26 - July 1, 2000, p. 73. (in Russian)

I. Shmulevich, "Localized Key Finding: Algorithms and Applications," presented at the Tonality Induction Expert Meeting, Nijmegen, The Netherlands, April 6-9, 1999. (invited)

I. Shmulevich, D. Povel, "Complexity Measures of Musical Rhythms," presented at the Rhythm Performance and Production Workshop, Wassenaar, The Netherlands, July 25-28, 1998. (invited)